Resources


Challenge Open Access

2018 IEEE BHI and BSN Data Challenge

Tom Pollard, Alistair Johnson, Jesse Raffa

A challenge to explore real clinical questions in critically ill patients using the MIMIC. A collaboration with the IEEE Conference on Biomedical and Health Informatics 2018 and the IEEE Conference on Body Sensor Networks.

weekend effect ieee challenge mimic

Published: Feb. 5, 2018. Version: 1.0

Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Harshita Sharma, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay

MS-CXR is a new dataset containing 1162 chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

vision-language processing localization phrase grounding chest x-ray

Published: Nov. 15, 2024. Version: 1.1.0

Database Credentialed Access

RadGraph2: Tracking Findings Over Time in Radiology Reports

Adam Dejl, Sameer Khanna, Patricia Therese Pile, Kibo Yoon, Steven QH Truong, Hanh Duong, Agustina Saenz, Pranav Rajpurkar

RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which captures key findings as well as mentions of changes that occurred in comparison with the previous radiology studies.

chest x-rays relation extraction disease progression information extraction radiology reports named entity recognition

Published: Aug. 8, 2024. Version: 1.0.0

Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Jeewon Yang, Seunghyun Won, Edward Choi

An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Published: June 26, 2024. Version: 1.0.1

Database Credentialed Access

A Temporal Dataset for Respiratory Support in Critically Ill Patients

Mira Moukheiber, Lama Moukheiber, Dana Moukheiber, Sicheng Hao, Leo Anthony Celi, Hyung-Chul Lee

A benchmark dataset offering hourly records over a 90-day period for 50,920 ICU subjects, including dynamic pulmonary function data and a spectrum of covariates for respiratory intervention analyses.

oberservational data time-series

Published: May 31, 2024. Version: 1.0.0

Database Open Access

CheXmask Database: a large-scale dataset of anatomical segmentation masks for chest x-ray images

Nicolas Gaggion, Candelaria Mosquera, Martina Aineseder, Lucas Mansilla, Diego Milone, Enzo Ferrante

CheXmask Database is a 657,566 uniformly annotated chest radiographs with segmentation masks. Images were segmented using HybridGNet, with automatic quality control indicated by RCA scores.

chest x-ray segmentation medical image segmentation automatic quality assesment

Published: March 1, 2024. Version: 0.4

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

Dataset consisting of question and answer pairs synthetically generated from medical discharge summaries, designed to facilitate the training and development of large language models specifically tailored for healthcare applications

mimic-iv clinical question-answering medical discharge summaries large language models

Published: Jan. 11, 2024. Version: 1.0.0

Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: Dec. 19, 2023. Version: 1.0.0

Model Credentialed Access

Characterization of Stigmatizing Language in Medical Records

Keith Harrigian, Ayah Zirikly, Brant Chee, Alya Ahmad, Anne Links, Somnath Saha, Mary Catherine Beach, Mark Dredze

A suite of classifiers for detecting three types of stigmatizing language in electronic medical records. Trained on MIMIC-IV discharge notes.

clinical natural language processing domain transfer bias stigmatizing language large language models mimic

Published: Nov. 6, 2023. Version: 1.0.0

Database Credentialed Access

Medical-Diff-VQA: A Large-Scale Medical Dataset for Difference Visual Question Answering on Chest X-Ray Images

Xinyue Hu, Lin Gu, Qiyuan An, Mengliang Zhang, liangchen liu, Kazuma Kobayashi, Tatsuya Harada, Ronald Summers, Yingying Zhu

MIMIC-Diff-VQA provides a large-scale dataset for Difference visual question answering in medical chest x-ray images.

difference vqa vqa difference visual question answering visual question answering chest x-ray

Published: Sept. 15, 2023. Version: 1.0.0