Resources


Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

scene graph visual dialogue object detection semantic reasoning bounding box knowledge graph explainability reasoning relation extraction chest disease progression cxr radiology deep learning chest x-ray machine learning multimodal visual question answering

Published: July 13, 2021. Version: 1.0.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

convolutional network heatmap eye tracking explainability audio chest cxr radiology deep learning chest x-ray machine learning multimodal

Published: Sept. 12, 2020. Version: 1.0.0

Database Open Access

CGMacros: a scientific dataset for personalized nutrition and diet monitoring

Ricardo Gutierrez-Osuna, David Kerr, Bobak Mortazavi, Anurag Das

CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.

diabetes continuous glucose monitors obesity machine learning postprandial glucose response food macronutrients metabolic models food photographs personalized nutrition

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

LLaVA-Rad MIMIC-CXR Annotations

Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama, Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew Lungren, Akshay Chaudhari, Serena Yeung, Curtis Langlotz, Sheng Wang, Hoifung Poon

This dataset provides GPT-4 extracted sections of radiology reports from MIMIC-CXR, complementing rule-based section extractions with additional reports with findings, and removing references to priors from findings.

Published: Jan. 24, 2025. Version: 1.0.0

Database Credentialed Access

DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries

Jayetri Bardhan, Anthony Colas, Kirk Roberts, Daisy Zhe Wang

DrugEHRQA is a QA dataset containing question-answers from MIMIC-III tables and discharge summaries.

question-answer qa

Published: April 12, 2022. Version: 1.0.0

Database Open Access

Behavioral and autonomic dynamics during propofol-induced unconsciousness

Sandya Subramanian, Patrick Purdon, Riccardo Barbieri, Emery Brown

Multimodal point process indices for heart rate variability and electrodermal activity for 9 subjects who are undergoing a controlled propofol sedation experiment where the concentration was increased and then decreased in stages.

autonomic nervous system anesthesia propofol heart rate variability electrodermal activity

Published: July 30, 2021. Version: 1.0

Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

scene graph visual dialogue object detection semantic reasoning bounding box knowledge graph explainability reasoning relation extraction chest disease progression cxr radiology deep learning chest x-ray machine learning multimodal visual question answering

Published: July 13, 2021. Version: 1.0.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

convolutional network heatmap eye tracking explainability audio chest cxr radiology deep learning chest x-ray machine learning multimodal

Published: Sept. 12, 2020. Version: 1.0.0

Database Open Access

Cerebral Vasoregulation in Elderly with Stroke

Multimodal data from a large study investigating the effects of ischemic stroke on cerebral vasoregulation.

stroke vasoregulation multiparameter

Published: Oct. 4, 2018. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi

We introduce MIMIC-Ext-MIMIC-CXR-VQA, a complex, diverse, and large-scale dataset designed for Visual Question Answering (VQA) tasks within the medical domain, focusing primarily on chest radiographs.

question answering benchmark radiology evaluation deep learning chest x-ray electronic health records machine learning multimodal visual question answering

Published: July 19, 2024. Version: 1.0.0