Resources


Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, Zhiyong Lu, Roger Mark, Seth Berkowitz, Steven Horng

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

computer vision radiology deep learning chest x-ray mimic

Published: March 12, 2024. Version: 2.1.0

Database Restricted Access

Pulmonary Edema Severity Grades Based on MIMIC-CXR

Ruizhi Liao, Geeticka Chauhan, Polina Golland, Seth Berkowitz, Steven Horng

Pulmonary edema metadata and labels for MIMIC-CXR

Published: Feb. 9, 2021. Version: 1.0.1

Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

disease progression cxr vision-language processing radiology chest x-ray multimodal

Published: March 17, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

computer vision chest x-rays natural language processing radiology machine learning mimic

Published: July 23, 2024. Version: 2.1.0

Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Harshita Sharma, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay

MS-CXR is a new dataset containing 1162 chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

vision-language processing chest x-ray localization phrase grounding

Published: Nov. 15, 2024. Version: 1.1.0

Database Credentialed Access

ReXPref-Prior: A MIMIC-CXR Preference Dataset for Reducing Hallucinated Prior Exams in Radiology Report Generation

Oishi Banerjee, Hong-Yu Zhou, Subathra Adithan, Stephen Kwak, Kay Wu, Pranav Rajpurkar

We propose ReXPref-Prior, an adapted version of MIMIC-CXR where GPT-4 has removed references to prior exams from both findings and impression sections of chest X-ray reports.

chest x-rays reinforcement learning hallucination

Published: Aug. 14, 2024. Version: 1.0.0

Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

disease progression cxr vision-language processing radiology chest x-ray multimodal

Published: March 17, 2023. Version: 1.0.0

Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, Tom Pollard, Fayaz Jamil, Timo Kohlberger, Charles Lau, Atilla Kiraly

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Model Credentialed Access

Medical AI Research Foundations: A repository of medical foundation models

Shekoofeh Azizi, Jan Freyberg, Laura Culp, Patricia MacWilliams, Sara Mahdavi, Vivek Natarajan, Alan Karthikesalingam

Medical AI Research Foundations is a repository of medical foundation models.

Published: April 25, 2023. Version: 1.0.0

Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Harshita Sharma, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay

MS-CXR is a new dataset containing 1162 chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

vision-language processing chest x-ray localization phrase grounding

Published: Nov. 15, 2024. Version: 1.1.0