Resources


Database Open Access

Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters

Jesse Raffa

Dataset extracted from MIMIC-II for a tutorial on effectiveness of indwelling arterial catheters in hemodynamically stable patients with respiratory failure for mortality outcomes.

Published: Oct. 28, 2016. Version: 1.0

Software Open Access

De-Identification Software Package

The deid software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.

phi deidentification anonymization

Published: Dec. 18, 2007. Version: 1.1

Database Credentialed Access

MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi

We introduce MIMIC-Ext-MIMIC-CXR-VQA, a complex, diverse, and large-scale dataset designed for Visual Question Answering (VQA) tasks within the medical domain, focusing primarily on chest radiographs.

question answering multimodal benchmark radiology evaluation visual question answering electronic health records deep learning machine learning chest x-ray

Published: July 19, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ED

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng

A large database of emergency department admissions.

emergency department ed emergency mimic-iv electronic health record mimic

Published: Jan. 5, 2023. Version: 2.2

Database Restricted Access

Hospitalized patients with heart failure: integrating electronic healthcare records and external outcome data

Zhongheng Zhang, Linghong Cao, Yan Zhao, Ziyin Xu, Rangui Chen, Lukai Lv, Ping Xu

The new version added beta blockers in the dat_md.csv file. Dataset comprising hospital-level data on patients who were admitted with heart failure to Zigong Fourth People’s Hospital, Sichuan, China between 2016 and 2019.

heart failure china electronic health record

Published: May 22, 2022. Version: 1.3

Database Open Access

MIMIC Database

The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordi…

health record ehr icu critical care mimic

Published: March 15, 2000. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care natural language processing electronic health record clinical notes mimic

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

MIMIC-IV on FHIR

Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Philip van Damme, Piotr Szul, John Grimes, Alistair Johnson

MIMIC-IV and MIMIC-IV-ED data mapped into FHIR resources.

mimic-iv fhir electronic health record us core mimic fast healthcare interoperability resources

Published: Nov. 12, 2024. Version: 2.1

Database Credentialed Access

CORAL: expert-Curated medical Oncology Reports to Advance Language model inference

Madhumita Sushil, Vanessa Kennedy, Divneet Mandair, Brenda Miao, Travis Zack, Atul Butte

Medical oncology progress notes annotated with advanced, comprehensive oncology-relevant concepts and relationships.

information extraction artificial intelligence oncology natural language processing large language models electronic health records

Published: Feb. 7, 2024. Version: 1.0

Database Credentialed Access

RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports

Sarvesh Soni, Kirk Roberts

RadQA is an electronic health record question answering dataset containing clinical questions that can be answered using the Findings and Impressions sections of radiology reports

machine reading comprehension radiology reports question answering clinical notes electronic health records

Published: Dec. 9, 2022. Version: 1.0.0