Resources


Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

scene graph visual dialogue object detection semantic reasoning bounding box knowledge graph explainability reasoning relation extraction chest cxr disease progression multimodal radiology visual question answering deep learning machine learning chest x-ray

Published: July 13, 2021. Version: 1.0.0

Software Open Access

Waveform Database Software Package (WFDB) for MATLAB and Octave

Ikaro Silva, Benjamin Moody, George Moody

Tools for working with waveforms in MATLAB.

Published: April 5, 2021. Version: 0.10.0

Database Credentialed Access

Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database

Xiang Yue, Xinliang Frederick Zhang, Huan Sun

Annotated Question Answering Pairs for Clinical Notes in the MIMIC-III Database

clinical question answering clinical nlp clinical reading comprehension

Published: Jan. 15, 2021. Version: 1.0.0

Database Restricted Access

In-hospital physical activity measured with a new Bosch accelerometer sensor system

Severin Schricker, Nico Schmid, Moritz Schanz, Martin Kimmel, Mark Dominik Alscher

Measurements of physical activity with wrist-worn Bosch sensor platform to test predictive performance for the duration of hospitalization and readmission in 58 patients with acute illnesses in internal medicine

prediction acute illness hospitalization readmission accelerometry accelerometer

Published: Dec. 3, 2020. Version: 1.0

Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, James Booth, Giovanna Rosas, Gurusai Sujitha Peramsetty, Anthony Knighton, Jeff Foster, Ken Saag, Maria Ioana Danila

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

gout nlp emergency department

Published: Oct. 19, 2020. Version: 1.0

Database Credentialed Access

Eye Gaze Data for Chest X-rays

Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi

This dataset was a collected using an eye tracking system while a radiologist interpreted and read 1,083 public CXR images. The dataset contains the following aligned modalities: image, transcribed report text, dictation audio and eye gaze data.

audio convolutional network heatmap eye tracking explainability chest cxr multimodal radiology deep learning machine learning chest x-ray

Published: Sept. 12, 2020. Version: 1.0.0

Database Open Access

Fetal ECG Synthetic Database

The FECGSYNDB is a large database of simulated adult and non-invasive fetal ECG (NI-FECG) signals, which provides a robust resource that enables reproducible research in the field. The data is generated using the FECGSYN simulator (visit website).

synthetic fetal ecg

Published: April 29, 2016. Version: 1.0.0

Visualize waveforms

Software Open Access

Data Chromatix

Analysis of biomedical time series plays a key role in clinical management and basic investigation. However, most conventional monitors streaming data in real-time show only the most recent values, not referenced to past dynamics. The proposed visua…

visualization

Published: Nov. 9, 2015. Version: 1.0.0

Database Open Access

ERP-based Brain-Computer Interface recordings

Data generated as part of a study aimed at identifying the factors limiting the performance of brain-computer interfaces based on event-related potentials.

brain-computer interface neuroelectric

Published: March 4, 2014. Version: 1.0.0

Visualize waveforms

Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

2013 ShARe/CLEF eHealth Evaluation Lab: Natural Language Processing and Information Retrieval for Clinical Care (Tasks 1 and 2).

natural language processing

Published: Feb. 15, 2013. Version: 1.0