Resources


Database Open Access

CheXmask Database: a large-scale dataset of anatomical segmentation masks for chest x-ray images

Nicolas Gaggion, Candelaria Mosquera, Martina Aineseder, Lucas Mansilla, Diego Milone, Enzo Ferrante

CheXmask Database is a 657,566 uniformly annotated chest radiographs with segmentation masks. Images were segmented using HybridGNet, with automatic quality control indicated by RCA scores.

chest x-ray segmentation medical image segmentation automatic quality assesment

Published: March 1, 2024. Version: 0.4


Database Open Access

CHB-MIT Scalp EEG Database

John Guttag

EEG recordings from pediatric subjects with intractable seizures, collected at the Children’s Hospital Boston.

medication seizure eeg neuroelectric

Published: June 9, 2010. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-IV on FHIR

Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Philip van Damme, Piotr Szul, John Grimes, Alistair Johnson

MIMIC-IV and MIMIC-IV-ED data mapped into FHIR resources.

mimic-iv fhir electronic health record us core mimic fast healthcare interoperability resources

Published: Nov. 12, 2024. Version: 2.1


Database Contributor Review

COVID Data for Shared Learning (CDSL): A comprehensive, multimodal COVID-19 dataset from HM Hospitales

Álvaro Ritoré, Andreea M Oprescu, Alberto Estirado Bronchalo, Miguel Ángel Armengol de la Hoz

COVID Data for Shared Learning (CDSL) is a multimodal database comprising de-identified structured health data and radiological images from 4,479 patients with COVID-19, as a comprehensive toolkit for developing predictive models.

covid-19 multimodal database radiological images open data healthcare data machine learning and ai

Published: Oct. 25, 2024. Version: 1.0.0


Database Credentialed Access

C-REACT: Contextualized Race and Ethnicity Annotations for Clinical Text

Oliver Bear Don't Walk IV, Adrienne Pichon, Harry Reyes Nieva, Tony Sun, Jaan Lı, Joshua Winston Joseph, Sivan Kinberg, Lauren R Richter, Salvatore Crusco, Kyle Kulas, Shaan Ahmed, Daniel Snyder, Ashkon Rahbari, Benjamin Ranard, Pallavi Juneja, Dina Demner-Fushman, Noemie Elhadad

Two sets of gold-standard annotations for race and ethnicity information from clinical notes in MIMIC-III. Contains race and ethnicity label assignments and related information such as country of origin and spoken language.

clinical notes patient country information race and ethnicity patient language information

Published: Oct. 21, 2024. Version: 1.0.0


Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, Jason Hom, Christian Bluethgen, Eduardo Pontes Reis, Sergios Gatidis, Namuun Clifford, Joseph Daws, Arash Tehrani, Jangwon Kim, Akshay Chaudhari

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing clinical notes brief hospital course text summarization machine learning

Published: Oct. 10, 2024. Version: 1.1.0


Database Credentialed Access

Comprehensive Polysomnography (CPS) Dataset: A Resource for Sleep-Related Arousal Research

Stefan Kraft, Andreas Theissler, Vera Wienhausen-Wilke, Philipp Walter, Gjergji Kasneci

This dataset includes polysomnographic sleep recordings from a study on sleep-related arousal diagnostics, featuring raw and derived data channels, annotated event types, and questionnaire data.

polysomnography sleep disorders machine learning in healthcare sleep arousal diagnostics pulse wave analysis

Published: Sept. 18, 2024. Version: 1.0.0


Database Credentialed Access

MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine

Juan Miguel Lopez Alcaraz, Nils Strodthoff

MIMIC-IV-ext-MDS-ED proposes a dataset to benchmark multimodal decision support in the emergency department. It features multimodal input (including ECG waveforms) and a comprehensive set of prediction targets (diagnoses and deterioration prediction)

emergency department ecg multimodal benchmark diagnoses prediction deterioration prediction

Published: Sept. 12, 2024. Version: 1.0.0


Database Contributor Review

Salzburg Intensive Care database (SICdb), a freely accessible intensive care database

Niklas Rodemund, Andreas Kokoefer, Bernhard Wernly, Crispiana Cozowicz

The SICdb dataset, version 1.0.8 contains 27350 admissions to an ICU in an Austrian tertiary care institution.

clinical intensive care critical care open data machine learning

Published: Sept. 10, 2024. Version: 1.0.8


Database Restricted Access

Multimodal Physiological Indices During Surgery Under Anesthesia

Sandya Subramanian, Bryan Tseng, Riccardo Barbieri, Emery Brown

Multimodal physiological indices collected during surgery when patients were under anesthesia

anesthesia nociception

Published: Aug. 23, 2024. Version: 1.0