#Makefile for downloading and building all of the native libraries to support WFDB;
#WFDB will be build on the current directory under the tmp subfolder
#This Makefile will build the following packages:
# curl
# wfdb (with curl dependency)
# edr (with wfdb dependency)
# wfdb 32 bit (no curl depency)
# ecgpuwave (with wfdb 32 bit dependency)
# mse
#
#
# The file will fetch the required files from their resepective sources
# and compile everything accordingly.
#This Makefile is not fully functional ! It is provided mainly as a aid for the compilation.
#See comments on respective targets for more information.
#To check linking run: otool -L ./nativelibs/macosx-x86_64/lib/libwfdb.10.dylib
#Package names and versions
CURL=curl-7.33.0
WFDB=wfdb-10.5.22
ECGPUWAVE=ecgpuwave-1.3.2
BUILD_DIR=build
MATLAB=/Applications/MATLAB_R2013b.app/bin/matlab
INSTALL_DIR:=$(shell pwd)
BUILD_DIR32=$(BUILD_DIR)32
WFDB32=$(WFDB)32
clean: clean-wfdb clean-curl clean-edr clean-ecgpuwave
rm -rf ./tmp; \
rm -rf ./$(BUILD_DIR);\
rm -rf ./$(BUILD_DIR)
##CURL TARGET
clean-curl:
rm -rf ./tmp/$(CURL); \
rm -f ./curl.isconfig; \
rm -f ./curl.isbuilt; \
rm -f curl.tar.gz
curl.tar.gz:
wget http://curl.haxx.se/download/$(CURL).tar.gz; \
mv $(CURL).tar.gz curl.tar.gz; \
mkdir -p ./tmp/ ;\
mkdir -p ./$(BUILD_DIR) ;\
cp ./curl.tar.gz ./tmp/
curl.isconfig: curl.tar.gz
cd ./tmp/; \
tar xfvz curl.tar.gz; \
cd $(CURL); \
./configure --prefix=$(INSTALL_DIR)/$(BUILD_DIR) --without-ssl --without-zlib --without-libssh2 --disable-ldap; \
touch ../../curl.isconfig
curl.isbuilt: curl.isconfig
cd ./tmp/$(CURL); \
make ;\
make install \
&& touch ../../curl.isbuilt;
curl: curl.isbuilt
##WFDB TARGET
# Requires mannuall editing of the ./conf/darwin*.def files
# to remove any references to ppc and i386
clean-wfdb:
rm -rf ./tmp/$(WFDB)
rm -f ./wfdb.isconfig; \
rm -f ./wfdb.isbuilt; \
rm -f wfdb.tar.gz
wfdb.tar.gz:
wget http://www.physionet.org/physiotools/wfdb.tar.gz; \
wget http://wfdb-app-toolbox.googlecode.com/svn/trunk/dependencies/darwin-slib.def ;\
wget http://wfdb-app-toolbox.googlecode.com/svn/trunk/dependencies/darwin.def ;\
cp ./wfdb.tar.gz ./tmp/wfdb.tar.gz
wfdb.isconfig: wfdb.tar.gz
cd ./tmp; \
tar xvfz wfdb.tar.gz; \
cp -vf ../darwin.def ./$(WFDB)/conf/ ;\
cp -vf ../darwin-slib.def ./$(WFDB)/conf/ ;\
cd $(WFDB); \
./configure --prefix=$(INSTALL_DIR)/$(BUILD_DIR) --with-libcurl \
&& touch ../../wfdb.isconfig
wfdb.isbuilt: C_INCLUDE_PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/include
wfdb.isbuilt: LIBRARY_PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/lib
wfdb.isbuilt: PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/bin:$(PATH)
wfdb.isbuilt: curl.isbuilt wfdb.isconfig
cd ./tmp/;\
cd ./$(WFDB)/ ;\
make ;\
make install \
&& touch ../../wfdb.isbuilt
wfdb: wfdb.isbuilt
##EDR TARGET
clean-edr:
rm -f edr*; \
rm -f ./$(BUILD_DIR)/edr;
edr: LC:=$(shell $(INSTALL_DIR)/$(BUILD_DIR)/bin/curl-config --cflags)
edr: LL=$(INSTALL_DIR)/$(BUILD_DIR)
edr: edr.c wfdb.isbuilt
gcc $(LC)/curl -o edr -O edr.c -L$(LL)/lib -L$(LL)/lib64 -lm -lwfdb -lcurl
cp edr ./$(BUILD_DIR)/bin;
edr.c:
wget http://www.physionet.org/physiotools/edr/edr.c
#MULTISCALE ENTROPY TARGET
clean-mse:
rm -f mse*; \
rm -f ./$(BUILD_DIR)/mse;
mse: mse.c
gcc -o mse -O mse.c -lm
cp mse ./$(BUILD_DIR)/bin;
mse.c:
wget http://www.physionet.org/physiotools/mse/mse.c
#WFDB 32 - required by ECGPUWAVE
#To compile i386 version on a Mac, you need to modify the ./conf/darwin-slib.def file
# and pass the -m32 argument to the GCC flag and change all arch types from
# x86_64 to i386 (configure script does not seem to work). After
#the library is build, copy the library files to the buil32 directory. The target
#below does not work, but is kept here for documentation. TODO: fix this target!
clean-wfdb32:
rm -rf ./tmp/$(WFDB32)
rm -f ./wfdb32.isconfig; \
rm -f ./wfdb32.isbuilt; \
rm -rf ./$(BUILD_DIR32) ;\
rm -f wfdb32.tar.gz
wfdb32.isconfig: wfdb.tar.gz
mkdir -p ./$(BUILD_DIR32) ;\
cp ./wfdb.tar.gz ./$(BUILD_DIR32)/wfdb.tar.gz ;\
cd ./$(BUILD_DIR32);\
tar xvfz wfdb.tar.gz;\
mv $(WFDB) ../tmp/$(WFDB32) ;\
cp -vf ../darwin.def ../tmp/$(WFDB32)/conf/ ;\
cp -vf ../darwin-slib.def ../tmp/$(WFDB32)/conf/ ;\
cd ../tmp/$(WFDB32) ;\
./configure --prefix=$(INSTALL_DIR)/$(BUILD_DIR32) -m32 --without-netfiles \
&& touch ../../wfdb32.isconfig
wfdb32.isbuilt: C_INCLUDE_PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/include
wfdb32.isbuilt: LIBRARY_PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/lib
wfdb32.isbuilt: PATH:=$(INSTALL_DIR)/$(BUILD_DIR)/bin:$(PATH)
wfdb32.isbuilt: curl.isbuilt wfdb32.isconfig
cd ./tmp/$(WFDB32);\
make install \
&& touch ../../wfdb32.isbuilt
wfdb32: wfdb32.isbuilt
#ECGPU Wave Target
#Copy the contents for the BUILD_32/lib to BUILD/lib directory
#For mac compilations you may get gfortran errors like:
# "error trying to exec 'f951': execcvp" . The following link helped resolved this issue:
# http://eftrunk.blogspot.com/2011/11/how-to-fix-error-trying-to-exec-f951.html
#Essentially requiring a re-install of GCC and gfortran tools.
clean-ecgpuwave:
rm -f ecgpuwave.isconfig; \
rm -f ecgpuwave.isbuilt; \
rm -f ecgpuwave.tar.gz ;\
rm -f ecgpuwaveMakefile
ecgpuwave.tar.gz:
wget http://www.physionet.org/physiotools/ecgpuwave/src/$(ECGPUWAVE).tar.gz ;\
mv $(ECGPUWAVE).tar.gz ecgpuwave.tar.gz ;\
cp ecgpuwave.tar.gz ./tmp/ecgpuwave.tar.gz;\
cd ./tmp;\
tar xvfz ecgpuwave.tar.gz
ecgpuwave-gfortran-addon.zip: ecgpuwave.tar.gz
wget http://wfdb-app-toolbox.googlecode.com/svn/trunk/dependencies/ecgpuwave-gfortran-addon.zip ;\
wget http://wfdb-app-toolbox.googlecode.com/svn/trunk/dependencies/ecgpuwaveMakefile ;\
cp ecgpuwave-gfortran-addon.zip ./tmp/ecgpuwave-gfortran-addon.zip ;\
cp ecgpuwaveMakefile ./tmp/ecgpuwaveMakefile ;\
cd ./tmp; \
unzip ecgpuwave-gfortran-addon.zip ;\
cp -rv ./*.f ./$(ECGPUWAVE)/ ;\
cp -rv ./ecgpuwaveMakefile ./$(ECGPUWAVE)/Makefile
ecgpuwave.isbuilt: BUILD32_DIR:=$(INSTALL_DIR)/$(BUILD_DIR)
ecgpuwave.isbuilt: wfdb32.isbuilt ecgpuwave-gfortran-addon.zip
cd ./tmp/$(ECGPUWAVE);\
export BUILD32_DIR;\
make ;\
cp -v ecgpuwave $(INSTALL_DIR)/$(BUILD_DIR)/bin ;\
cp -v /usr/local/lib/i386/libquadmath.0.dylib $(INSTALL_DIR)/$(BUILD_DIR)/lib ;\
cp -v /usr/local/lib/i386/libgfortran.3.dylib $(INSTALL_DIR)/$(BUILD_DIR)/lib ;\
cp -v /usr/local/lib/i386/libgfortran.dylib $(INSTALL_DIR)/$(BUILD_DIR)/lib ;\
cp -rv $(INSTALL_DIR)/$(BUILD_DIR32)/lib/* $(INSTALL_DIR)/$(BUILD_DIR)/lib ;\
touch ../../ecgpuwave.isbuilt
ecgpuwave: ecgpuwave.isbuilt
all: curl wfdb mse edr wfdb32 ecgpuwave
#The install target will copy the contents of the build directory
#to the current lib lib64 and bin directories and remove configuration specific files
install:
rm -rv ./bin/* ;\
rm -rf ./lib/* ;\
rm -rf ./lib64/* ;\
cp -R ./$(BUILD_DIR)/bin/* ./bin/ ;\
cp -R ./$(BUILD_DIR)/lib/* ./lib/ ;\
cp -R ./$(BUILD_DIR)/lib64/* ./lib64/ ;\
rm -f ./bin/psfd ./bin/hrmem ./bin/cur-config ./bin/hrfft ./bin/pschar ./bin/hrlomb ./bin/hrplot ./bin/setwfdb ./bin/cshsetwfdb ./bin/curl-config ./lib/libcurl.la ./lib/pkgconfig/libcurl.pc
#Test will run the MATLAB Unit tests headlessly
#This requires the complete code repository and that the Makefile
#is run under [root-install-dir]/wfdb-app-tolbox/mcode/nativelibs/linux-amd64/ directory
test:
cd ../../ ;\
$(MATLAB) -nodesktop -nosplash -nodisplay -r "addpath(pwd);cd ../UnitTests;BatchTest;exit"
#Package will clean all temporary files
#generated by this Makefile so that the Toolbox binaries
#are ready to be deployed
package: install
rm -rf ./tmp/ ;\
rm -rf ./$(BUILD_DIR) ;\
rm -rf ./$(BUILD_DIR32) ;\
rm curl* ecgpuwave* edr* mse* wfdb* *~