Name: Multiscale Poincare Plots
Published: April 12, 2016
License: https://opendatacommons.org/licenses/by/index.html

Software Open Access

Published: April 12, 2016. Version: 1.0.0

New Software Package Added: MPP (April 12, 2016, midnight)

The Multiscale Poincare Plots package contains MATLAB scripts used to visualize time series by plotting Poincare plots of the original signal course grained at multiple time scales.

When using this resource, please cite the original publication:

Henriques TS, Mariani S, Burykin A, Rodrigues F, Silva TF, Goldberger AL, Multiscale Poincaré plots for visualizing the structure of heartbeat time series, BMC Medical Informatics and Decision Making. 2016 Feb 9;16(1):1.

Please include the standard citation for PhysioNet: (show more options)
Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., ... & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.

APA	Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., ... & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.
MLA	Goldberger, A., et al. "PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220." (2000).
CHICAGO	Goldberger, A., L. Amaral, L. Glass, J. Hausdorff, P. C. Ivanov, R. Mark, J. E. Mietus, G. B. Moody, C. K. Peng, and H. E. Stanley. "PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220." (2000).
HARVARD	Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P.C., Mark, R., Mietus, J.E., Moody, G.B., Peng, C.K. and Stanley, H.E., 2000. PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.
VANCOUVER	Goldberger A, Amaral L, Glass L, Hausdorff J, Ivanov PC, Mark R, Mietus JE, Moody GB, Peng CK, Stanley HE. PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.

Description

Poincaré delay maps are widely used in the analysis of cardiac interbeat interval (RR) dynamics. To facilitate visualization of the structure of these complex time series, we introduced a methodology called multiscale Poincaré (MSP) plots.

Briefly, the function MsPplots.m (version 1.0) starts with the original time series and employs a coarse-graining procedure to create a set of time series, each of which represents the system’s dynamics on a different time scale. Next, Poincaré (delay) plots are constructed (using the function dscatter.m by Robert Henson) for the original and the coarse-grained time series. Finally, as an optional adjunct, color can be added to each point to represent its normalized frequency.

The functions have been tested on Matlab R2010b, R2014b and R2015a on April 11 2016.

Usage

Inputs to the MsPplots.m function are:

The time series vector with one column (mandatory)
The number of time scales (integer; default: scales = 12)
Poincaré plots from scale 1 to scales by scstep. (integer; default: scstep = 1)
The number of rows in the plot montage (integer; default: nrwo = 3)
The number of columns in the plot montage (integer; default: ncol = 4)
A option that allows to save the final figure (boolean; default: 1)
The name of the figure to be saved (default: Figure1.png)

Also provided, are two example scripts that employ deidentified RR time series from two sources: one from the database for Chaos Is the Normal Heart Rate Chaotic? and the other from the Normal Sinus Rhythm RR Interval Database, both available at PhysioNet.

The first example script requires the text file n2-filtered included in this directory, and the second one requires the WFDB Matlab toolbox to access data from Physiobank.

Licensing

The helper function dscatter.m is written by a separate author and is covered by the BSD License under Mathsworks. The rest of the software in this directory is licensed under the GNU Public License 3.

Contributors

The Multiscale Poincare Plot (MSP) package was developed by Teresa S. Henriques, Sara Mariani and Anton Burykin. A detailed description can be found in the citation.

Access

Access Policy:
Anyone can access the files, as long as they conform to the terms of the specified license.

License (for files):
Open Data Commons Attribution License v1.0

Discovery

Topics:
poincare visualization

Corresponding Author

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Files

Total uncompressed size: 0 B.

Access the files

Download the files using your terminal:

wget -r -N -c -np https://physionet.org/files/mpp/1.0.0/

Download the files using AWS command line tools:

aws s3 sync --no-sign-request s3://physionet-open/mpp/1.0.0/ DESTINATION

Folder Navigation:

Name	Size	Modified
images
licenses
Example1.m (download)	439 B	2019-04-12
Example2.m (download)	719 B	2019-04-12
MsPplots.m (download)	4.9 KB	2019-04-12
MsPplots.zip (download)	312.2 KB	2019-04-12
dscatter.m (download)	6.1 KB	2019-04-12
n2-filtered (download)	956.7 KB	2019-04-12

Multiscale Poincare Plots

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