PhysioTag: An Open-Source Platform for Collaborative Annotation of Physiological Waveforms 1.0.0
(7,696 bytes)
"""
Django settings for waveform annotation project.
Generated by 'django-admin startproject' using Django 1.11.5.
For more information on this file, see
https://docs.djangoproject.com/en/1.11/topics/settings/
For the full list of settings and their values, see
https://docs.djangoproject.com/en/1.11/ref/settings/
"""
import os
from decouple import config
# Basic settings based on development environment
DEBUG = config('DEBUG', default=False, cast=bool)
CACHE = config('CACHE', default=False, cast=bool)
SESSION_COOKIE_SECURE = False
SESSION_ENGINE = 'django.contrib.sessions.backends.cached_db'
ALLOWED_HOSTS = ['*']
def custom_show_toolbar(request):
return True
DEBUG_TOOLBAR_CONFIG = {
'JQUERY_URL': '',
# 'SHOW_TOOLBAR_CALLBACK': custom_show_toolbar,
}
# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
PROJECT_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
BASE_DIR = os.path.dirname(PROJECT_DIR)
HEAD_DIR = os.path.dirname(BASE_DIR)
LOGIN_URL = 'login'
# For password resets
# Check output in another terminal window here:
# python -m smtpd -n -c DebuggingServer localhost:1025
EMAIL_BACKEND = 'django.core.mail.backends.smtp.EmailBackend'
EMAIL_HOST = config('EMAIL_HOST', default='localhost')
EMAIL_PORT = config('EMAIL_PORT', default=1025, cast=int)
EMAIL_HOST_USER = ''
EMAIL_HOST_PASSWORD = ''
EMAIL_USE_TLS = False
EMAIL_FROM = 'help@waveform-annotation.com'
# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/1.11/howto/deployment/checklist/
SECRET_KEY = config('SECRET_KEY')
# Application definition
INSTALLED_APPS = [
'django_crontab',
'debug_toolbar',
'django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.staticfiles',
'django_plotly_dash.apps.DjangoPlotlyDashConfig',
'django.contrib.sessions',
'django.contrib.messages',
'graphene_django',
'export',
'waveforms',
'website'
]
MIDDLEWARE = [
'django.middleware.security.SecurityMiddleware',
'whitenoise.middleware.WhiteNoiseMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.common.CommonMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django_plotly_dash.middleware.BaseMiddleware',
'django_plotly_dash.middleware.ExternalRedirectionMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'debug_toolbar.middleware.DebugToolbarMiddleware',
'django.middleware.clickjacking.XFrameOptionsMiddleware',
'website.middleware.thread_local_middleware'
]
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.sqlite3',
'NAME': os.path.join(HEAD_DIR,'db','db.sqlite3')
}
}
# Cache
if CACHE:
# Requires `redis-server` to be running in another terminal tab
CACHES = {
'default': {
'BACKEND': 'django_redis.cache.RedisCache',
'LOCATION': 'redis://localhost:6379',
'OPTIONS': {
'CLIENT_CLASS': 'django_redis.client.DefaultClient'
}
}
}
# .---------------- minute (0 - 59)
# | .------------- hour (0 - 23)
# | | .---------- day of month (1 - 31)
# | | | .------- month (1 - 12) OR jan,feb,mar,apr ...
# | | | | .---- day of week (0 - 6) (Sunday=0 or 7) OR sun,mon,tue,wed,thu,fri,sat
# | | | | |
# * * * * * user-name command to be executed
CRONJOBS = [
('0 0 * * *', 'waveform-django.cron.update_annotations')
]
ROOT_URLCONF = 'website.urls'
if not DEBUG:
LOGGING = {
'version': 1,
'disable_existing_loggers': False,
'formatters': {
'timestamp': {
'format': '{asctime} {levelname} {message}',
'style': '{',
},
},
'handlers': {
'file': {
'level': 'DEBUG',
'class': 'logging.FileHandler',
'filename': os.path.join(HEAD_DIR, 'debug', 'debug.log'),
'formatter': 'timestamp'
}
},
'loggers': {
'django': {
'handlers': ['file'],
'level': 'DEBUG',
},
},
}
TEMPLATES = [
{
'BACKEND': 'django.template.backends.django.DjangoTemplates',
'DIRS': [os.path.join(BASE_DIR,'templates')],
'APP_DIRS': True,
'OPTIONS': {
'context_processors': [
'django.template.context_processors.debug',
'django.template.context_processors.request',
'django.contrib.auth.context_processors.auth',
'django.contrib.messages.context_processors.messages',
],
},
},
]
X_FRAME_OPTIONS = 'SAMEORIGIN'
PLOTLY_COMPONENTS = [
'dash_core_components',
'dash_html_components',
'dash_renderer',
'dpd_components',
'dpd_static_support',
'dash_bootstrap_components'
]
PLOTLY_DASH = {
# Route used for the message pipe websocket connection
'ws_route': 'dpd/ws/channel',
# Route used for direct http insertion of pipe messages
'http_route': 'dpd/views',
# Flag controlling existince of http poke endpoint
'http_poke_enabled': True,
# Insert data for the demo when migrating
'insert_demo_migrations': False,
# Timeout for caching of initial arguments in seconds
'cache_timeout_initial_arguments': 60,
# Name of view wrapping function
'view_decorator': None,
# Flag to control location of initial argument storage
'cache_arguments': CACHE,
# Flag controlling local serving of assets
'serve_locally': False
}
# Session management
# Internationalization
# https://docs.djangoproject.com/en/1.11/topics/i18n/
LANGUAGE_CODE = 'en-us'
TIME_ZONE = 'America/New_York'
USE_I18N = True
USE_L10N = True
USE_TZ = True
# Django background tasks max attempts
MAX_ATTEMPTS = 5
# Static files (CSS, JavaScript, Images)
# https://docs.djangoproject.com/en/1.11/howto/static-files/
#USE_X_FORWARDED_HOST = True
#FORCE_SCRIPT_NAME = '/waveform-annotation'
if DEBUG:
STATIC_URL = '/static/'
STATIC_ROOT = 'assets'
STATICFILES_DIRS = [os.path.join(BASE_DIR, 'static')]
else:
STATIC_URL = '/waveform-annotation/static/'
STATIC_ROOT = os.path.join(HEAD_DIR, 'static')
STATICFILES_DIRS = [os.path.join(BASE_DIR, 'static')]
STATICFILE_FINDERS = [
'django.contrib.staticfiles.finder.FileSystemFinder',
'django.contrib.staticfiles.finder.AppDirectoriesFinder',
'django_plotly_dash.finders.DashAssetFinder',
'django_plotly_dash.finders.DashComponentFinder',
'django_plotly_dash.finders.DashAppDirectoryFinder'
]
STATICFILES_STORAGE = 'whitenoise.storage.CompressedManifestStaticFilesStorage'
RECORDS_FILE = 'RECORDS_VTVF_LIMIT-5'
ASSIGNMENT_FILE = 'user_assignments.csv'
ALL_PROJECTS = ['sample_data']
# Projects in blacklist cannot be automatically assigned to users
BLACKLIST = []
# The minimum amount of events to assign
MIN_ASSIGNED = 10
# Events to be used in the practice data set
PRACTICE_SET = {
'sample_data': {
'v101l': False,
'v111l': False,
'v131l': True,
'v135l': False,
'v139l': True
}
}
# List of permitted HTML tags and attributes for rich text fields.
# The 'default' configuration permits all of the tags below. Other
# configurations may be added that permit different sets of tags.
# Attributes that can be added to any HTML tag
_generic_attributes = ['lang', 'title']