Featured Resources


Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: Dec. 19, 2023. Version: 1.0.0


Database Open Access

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

Hyung-Chul Lee, Chul-Woo Jung

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

waveform anesthesia vitaldb intraoperative biosignal ecg

Published: Sept. 21, 2022. Version: 1.0.0


Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center

critical care intensive care unit machine learning mimic

Published: Jan. 6, 2023. Version: 2.2


Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

computer vision chest x-rays natural language processing radiology machine learning mimic

Published: Sept. 19, 2019. Version: 2.0.0


Database Credentialed Access

BRAX, a Brazilian labeled chest X-ray dataset

Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro

BRAX contains 24,959 chest radiography exams and 40,967 images acquired in a large general Brazilian hospital. All images have been read by trained radiologists and 14 labels were derived from Brazilian Portuguese reports using NLP.

chest x-ray dataset artificial intelligence

Published: June 17, 2022. Version: 1.1.0


Database Credentialed Access

eICU Collaborative Research Database

Tom Pollard, Alistair Johnson, Jesse Raffa, Leo Anthony Celi, Omar Badawi, Roger Mark

Multi-center database comprising deidentified health data associated with over 200,000 admissions to ICUs across the United States between 2014-2015.

telemedicine icu critical care

Published: April 15, 2019. Version: 2.0


Latest Resources


Database Open Access

SensSmartTech database of cardiovascular signals synchronously recorded by an electrocardiograph, phonocardiograph, photoplethysmograph and accelerometer

Aleksandar Lazović, Predrag Tadić, Natalija Đorđević, Vladimir Atanasoski, Masa Tiosavljevic, Marija Ivanovic, Ljupco Hadzievski, Arsen Ristic, Vladan Vukcevic, Jovana Petrovic

SensSmartTech is a unique multiparametric dataset recorded systematically at rest and during the relaxation after activity. It contains the simultaneously recorded electrocardiogram, phonocardiogram, arterial plethysmograms and seismocardiogram.

Published: Dec. 19, 2024. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-IV-Ext-GPT-3_5-Generated-Discharge-Summaries-for-Low-Resource-Codes

Matúš Falis, Aryo Pradipta Gema, Hang Dong, Luke Daines, Siddharth Basetti, Michael Holder, Rose Penfold, Alexandra Birch, Beatrice Alex

9,606 Synthetic Discharge Summaries generated by GPT-3.5 based on combinations of ICD-10-code descriptions associated with real discharge summaries in MIMIC-IV. Focus on low resource codes.

icd coding data augmentation large language model

Published: Dec. 16, 2024. Version: 1.0.0


Database Restricted Access

Endoscapes2023, A Critical View of Safety and Surgical Scene Segmentation Dataset for Laparoscopic Cholecystectomy

Pietro Mascagni, Deepak Alapatt, Aditya Murali, Armine Vardazaryan, Alain Garcia Vazquez, Nariaki Okamoto, Guido Costamagna, Didier Mutter, Jacques Marescaux, Bernard Dallemagne, Nicolas Padoy

Endoscapes2023 enables the development of models for object detection, semantic and instance segmentation, and Critical View of Safety (CVS) prediction, contributing to safe laparoscopic cholecystectomy.

surgical safety computer assisted interventions semantic segmentation surgical data science medical imaging analysis

Published: Dec. 11, 2024. Version: 1.0.0


Database Credentialed Access

CovIdentify Dataset

Peter Cho, Md Mobashir Hasan Shandhi, Ali Roghanizad, Jessilyn Dunn

This contains wearable device data from Fitbit, Garmin, and Apple Watch users. The data is from April 2nd, 2020 to March 21st, 2021 and has been date-shifted. An appropriate amount has also shifted test dates for each user.

Published: Nov. 25, 2024. Version: 1.0.0


Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, Yikuan Li, Alice Lu, Prasanth Nannapaneni, Abdulrahman Chahin, Sicheng Hao, Felipe Torres Fabregas, Leo Anthony Celi, Adrian Wong, Maxwell Lloyd, Xavier Borrat Frigola, Hyung-Chul Lee, Daniel Schneider, Tom Pollard, Yuan Luo, Abel Kho, Roger Mark

A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).

Published: Nov. 19, 2024. Version: 0.1.0


Database Credentialed Access

MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing

Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Harshita Sharma, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay

MS-CXR is a new dataset containing 1162 chest X-ray bounding box labels paired with radiology text descriptions, annotated and verified by two board-certified radiologists.

vision-language processing localization phrase grounding chest x-ray

Published: Nov. 15, 2024. Version: 1.1.0