Resources


Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, Alistair Johnson

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0

Database Open Access

Induced Cesarean EHG DataSet (ICEHG DS): An open dataset with electrohysterogram records of pregnancies ending in induced and cesarean section delivery

Franc Jager

The design and development of ICEHG DS was funded by the Slovenian Research Agency (ARRS) under the research project Metabolic and inborn factors of reproductive health, birth III.

neuroelectric pregnancy electrohysterogram cesarean-section delivery induced delivery

Published: Oct. 8, 2023. Version: 1.0.1

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Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, Jorge Oliveira, Francesco Renna, Annie Gu, Erick Andres Perez Alday, Nadi Sadr, Sandra Mattos, Miguel Coimbra, Reza Sameni, Ali Bahrami Rad, Zuzana Koscova, Gari Clifford

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Song Wang, Ajay Jaiswal, Yuzhe Yang, Mingquan Lin, Yifan Peng, Atlas Wang

CXR-LT 2023 was a challenge for long-tailed, multi-label thorax disease classification on chest X-rays, held in conjunction with the ICCV 2023 workshop, CVAMD. This page contains extended long-tailed versions of the MIMIC-CXR-JPG v2.0.0 dataset.

Published: Sept. 28, 2023. Version: 1.1.0

Database Open Access

BIG IDEAs Lab Glycemic Variability and Wearable Device Data

Peter Cho, Juseong Kim, Brinnae Bent, Jessilyn Dunn

Glucose measurements and wrist-worn wearable sensor data from highnormoglycemic participants.

biomedical engineering pre-diabetes biomarkers

Published: Sept. 18, 2023. Version: 1.1.2

Database Credentialed Access

Medical-Diff-VQA: A Large-Scale Medical Dataset for Difference Visual Question Answering on Chest X-Ray Images

Xinyue Hu, Lin Gu, Qiyuan An, Mengliang Zhang, liangchen liu, Kazuma Kobayashi, Tatsuya Harada, Ronald Summers, Yingying Zhu

MIMIC-Diff-VQA provides a large-scale dataset for Difference visual question answering in medical chest x-ray images.

difference vqa vqa difference visual question answering visual question answering chest x-ray

Published: Sept. 15, 2023. Version: 1.0.0

Database Open Access

MIMIC-IV-ECG: Diagnostic Electrocardiogram Matched Subset

Brian Gow, Tom Pollard, Larry A Nathanson, Alistair Johnson, Benjamin Moody, Chrystinne Fernandes, Nathaniel Greenbaum, Jonathan W Waks, Parastou Eslami, Tanner Carbonati, Ashish Chaudhari, Elizabeth Herbst, Dana Moukheiber, Seth Berkowitz, Roger Mark, Steven Horng

The MIMIC-IV ECG module contains approximately 800,000 diagnostic electrocardiograms across nearly 160,000 unique patients. These patients overlap with the patients from the MIMIC-IV Clinical Database.

Published: Sept. 15, 2023. Version: 1.0

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Database Open Access

Integration of Electroencephalogram and Eye-Gaze Datasets for Performance Evaluation in Fundamentals of Laparoscopic Surgery (FLS) Tasks

Somayeh B Shafiei, Saeed Shadpour

Brain activity and eye gaze data were collected from a group of 25 participants who completed the FLS tasks using a trainer box (Pyxus®). Each participant performed the tasks five times, and their performance was evaluated by an expert rater.

Published: Aug. 23, 2023. Version: 1.0.0

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Database Credentialed Access

ReFiSco: Report Fix and Score Dataset for Radiology Report Generation

Katherine Tian, Sina J Hartung, Andrew A Li, Jaehwan Jeong, Fardad Behzadi, Juan Calle-Toro, Subathra Adithan, Michael Pohlen, David Osayande, Pranav Rajpurkar

Preliminary human expert evaluation study on 60 MIMIC-CXR radiology reports

Published: Aug. 23, 2023. Version: 0.0

Database Open Access

Heart and lung segmentations for MIMIC-CXR/MIMIC-CXR-JPG and Montgomery County TB databases

Benjamin Duvieusart, Felix Krones, Guy Parsons, Lionel Tarassenko, Bartlomiej W Papiez, Adam Mahdi

Heart and lung segmentations for 200 MIMIC-CXR/MIMIC-CXR-JPG chest x-rays and heart segmentations for 138 Montgomery County tuberculosis chest X-rays.

segmentation heart and lungs montgomery country tb mimic-cxr

Published: Aug. 14, 2023. Version: 1.0.0